Category Archives: python

Install pyEM on CentOS 7

After a week of silence, I’m back on track. I managed to integrate pyEM onto our systems, and this is my log about. We want it to export cryoSPARC data to relion. Since we don’t start from scratch, my first … Continue reading

Posted in bits, centos, linux, yum, python, EM, bash, modules, cryoSPARC | Leave a comment

Topaz install on CentOS 7

Yes I’m back to work. I should have logged it more, but I was busy with so many issues that the only thing I wanted to write was fiction. Anyway. Today we are going to install Topaz over our already … Continue reading

Posted in bits, centos, docker, EM, linux, modules, nvidia, python | Leave a comment

Creating a CentOS 7 systemctl service

I don’t know why I’m doing this. Really. But I may want to do it again in the future. Yes, sometimes I read myself and I’m ashamed. Today I’ve learned all by myself how to create a system task. You … Continue reading

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Handling files with python

You know now how to write a multi-platform GUI with Tkinter. I don’t know what your GUI is doing, but it’s good to know a few things about how to log them. For that and for other purposes, we need … Continue reading

Posted in bash, centos, linux, mac, osx, python, Uncategorized | Leave a comment

CCP-EM install on CentOS 7

The CCP-EM software suite is a package containing tools for cryo-EM. You can find it here. I want to install it together with the already existing software. The Brief instructions seem to work fine, provided you have the requirements. This … Continue reading

Posted in bash, bits, EM, modules, python | Leave a comment

LDAP and sshtunnel : remote user identification techniques with python

I need to check the identity of one active directory (AD) user on a computer that is not a member of the AD. If you don’t understand what I’m speaking about, I envy you 😀 I was working with python … Continue reading

Posted in bash, centos, linux, mac, osx, paramiko, python, software | Leave a comment

A Tkinter python multi-platform app/GUI

We wrote on python/wxpython Hello World a very simple window/gui. This time we are going to do it for real. The aim is to write “the app/GUI” that will run one command or another depending on the OS. We are … Continue reading

Posted in bash, centos, filesystems, linux, mac, python, software, Tkinter, windows, XP | 1 Comment