Category Archives: modules

A leginon docker on CentOS 7 Part II: centos7AutoInstallation.py

Posted on April 26, 2018 by

On the previous post, we prepared a basic LAMP docker to hold a leginon installation.  I assume now you downloaded the installer for CentOS 7 and copied it to the docker via ssh or shared folder. We can simply run … Continue reading →

Posted in bits, centos, containers, docker, EM, filesystems, leginon, linux, modules, mysql, yum | 1 Comment

A MATLAB Runtime module

Posted on March 19, 2018 by

First we download the chosen package from the MATLAB site. Then we unzip it on a test folder and run the provided install script. The procedure is quite easy, no programming knowledge is needed. We choose the path to our … Continue reading →

Posted in bits, linux, matlab, modules, slurm | Leave a comment

Add module path on CentOS 7

Posted on March 7, 2018 by

If you installed software modules on CentOS 7, you know that the module definitions are stored on /usr/share/Modules/modulefiles/ by default. We want to change that, so that we can store the modules on the place we want, or add different … Continue reading →

Posted in bash, centos, modules, software | Leave a comment

A relion 2.1.stable module for CentOS 7

Posted on December 19, 2017 by

There is a new relion to add to the collection. You can find the installation details here. I will tell you my experience doing as suggested. First thing that it calls my attention on the github instructions is that they … Continue reading →

Posted in bits, centos, EM, GPU, hardware, linux, modules, python | 1 Comment

Install openmpi-3.0.0 with UCX and infiniband support on CentOS 7

Posted on December 18, 2017 by

So I found out (yes I’m not on all mailing lists) there’s a new openmpi. This will be the third time I do this, and I guess it will not be the last. You check how to install openmpi-2.1.0 on Centos … Continue reading →

Posted in bits, hardware, linux, modules, slurm, software, yum | 1 Comment

A cisTEM module on CentOS 7

Posted on December 7, 2017 by

cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them. And you will find it here. I will not discuss about why you want to have it on your system instead of … Continue reading →

Posted in bits, centos, GPU, linux, modules, nvidia, slurm, software | 2 Comments

Scipion 1.1 module on CentOS 7

Posted on August 18, 2017 by

After a long break of not writing at all, I will try to regularly make entries again. At least, one per day. One of software, one of fiction. Probably I will not manage, but today I’m going to try to … Continue reading →

Posted in bits, centos, linux, modules, slurm | Leave a comment